Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs149391235 | chr1:161727174 | A/AT | 6.96E-5 | 405 | 16.17 | 16.43 | 4.3 | KM Plot |
| HNSC | rs150111061 | chr8:92167460 | T/TA | 1.44E-7 | 407 | 16.35 | 14.13 | 5.4 | KM Plot |
| HNSC | rs150693611 | chr20:44464600 | T/TA | 4.65E-7 | 407 | 16.43 | 14.98 | 9.13 | KM Plot |
| HNSC | rs1659698 | chr2:27411292 | A/G | 2.33E-6 | 412 | 7.27 | 13.07 | 17.35 | KM Plot |
| HNSC | rs16858575 | chr4:45492056 | G/T | 4.21E-5 | 412 | 16.97 | 15.2 | 6.92 | KM Plot |
| HNSC | rs16883979 | chr6:74342104 | C/G | 5.81E-5 | 411 | 17.13 | 13.12 | 10.3 | KM Plot |
| HNSC | rs16906238 | chr9:22526470 | A/G | 5.25E-8 | 412 | 7.17 | 16.43 | 16.25 | KM Plot |
| HNSC | rs16911770 | chr9:27756625 | A/G | 1.09E-9 | 412 | 3 | 13.17 | 17.35 | KM Plot |
| HNSC | rs1692181 | chr1:213090287 | C/T | 4.21E-5 | 407 | 16.13 | 20.77 | 5.03 | KM Plot |
| HNSC | rs16926673 | chr11:35022765 | C/T | 2.33E-5 | 412 | 16.37 | 16.15 | 9.2 | KM Plot |
| HNSC | rs16959476 | chr16:57926847 | A/G | 8.93E-9 | 412 | 4.52 | 17.1 | 16.17 | KM Plot |
| HNSC | rs16970543 | chr16:70814358 | C/T | 0 | 412 | 16.4 | 14.77 | 0.07 | KM Plot |
| HNSC | rs16978571 | chr18:44090658 | A/G | 1.47E-5 | 412 | 6.3 | 14.43 | 17.07 | KM Plot |
| HNSC | rs16990776 | chr20:44413485 | A/G | 6.1E-7 | 407 | 16.37 | 14.98 | 5.63 | KM Plot |
| HNSC | rs17004848 | chr22:24538918 | C/T | 3.92E-6 | 412 | 16.35 | 14.67 | 8.63 | KM Plot |